Fig_HGDP_NetStruct.png

NetStruct Hierarchy is a network-based method for inference of multiple hierarchical levels of population structure. The structure is summarized as a population structure tree (PST). An additional tool is available for visualizing the data and plotting it on geographic maps.

Details in: Greenbaum G, Rubin A, Templeton AR, Rosenberg NA (2019). Network-based hierarchical population structure analysis for large genomic datasets. Genome Research, 29, 2020-2033

NetStruct Hierarchy

 
biomaton.png

Biomaton is a user-friendly web-based platform for easy implementation and investigation of models in ecology and evolution. It allows seamless integration of models written in different programming languages (e.g. python, java, ect.). It also facilitates in distribution computation to cloud services such as AWS and to university computation clusters.

Biomaton

 
HapMap.png

This is the original version of NetStruct, and is a network-based inference of population structure from genetic data. It is similar to NetStruct Hierarchy, but does not automatically infers hierarchical levels. Requires the software Mathematica software, and is implemented with a simple GUI.

Details in: Greenbaum G, Templeton AR, Bar-David S (2016). Inference and analysis of population structure using genetic data and network theory. Genetics, 202, 1299-1312

NetStruct